Research outcomes

Publications

Prostate MRI research

Related research

Data

  • Prostate MRI rationale dataset: 180,000 image–mask–rationale examples for research on segmentation and clinical explanations, including rationale paraphrases. Dataset

Software

  • MedRationale provides training and evaluation code for ProstateVLM. GitHub repository
  • CancerSegFailure contains the project materials for our run-time failure-detection tool. Project repository · Paper

Abstract

This project studies how radiologists’ expertise can support safer, more accurate AI-assisted prostate MRI interpretation. Our main contribution is a rationale dataset that pairs MRI images and segmentation masks with clinical explanations derived from radiologists’ reports and PI-RADS guidance. It contains 180,000 image–mask–rationale examples, including language augmentation, and its rationale quality has been evaluated by expert radiologists. Building on this resource, we developed ProstateVLM to segment the prostate and explain its findings with localized image evidence. We also developed a tool for run-time failure detection. Our studies report improvements in segmentation on unseen datasets, image-grounded explanations, and failure detection. The papers, data preparation instructions, and software are listed above.

What is prostate MRI interpretation?

Radiologists examine prostate MRI to identify suspicious regions and describe their location, appearance, and extent. The Prostate Imaging Reporting and Data System (PI-RADS) provides a shared vocabulary for communicating these findings.

Our project brings this expertise into AI through two complementary forms of annotation: segmentation masks that mark regions in an image, and clinical rationales that explain the findings. We study the prostate gland, its anatomical zones, and lesions.

T2-weighted prostate MRI slice
T2-weighted prostate MRI.

Why integrate radiologist insights?

An AI-generated mask can show where a model predicts a lesion without explaining why the region is suspicious. A written explanation can describe a finding without showing which part of the image supports it. Both the prediction and its supporting evidence need to be available for examination.

The project investigates whether learning from radiologists’ reports alongside image annotations can improve segmentation and produce explanations grounded in clinical concepts. The rationale dataset, ProstateVLM, and failure-detection tool address these goals. Their results support further research toward AI assistance that radiologists can understand and verify; clinical benefit remains to be evaluated.

Prostate MRI rationale dataset

The dataset pairs MRI images with segmentation masks and clinical explanations (ICML 2025). We annotated public MRI data with radiologist-written PI-RADS reports, then converted these reports into rationales guided by PI-RADS.

Building the rationale dataset

Dataset-construction pipeline. Public prostate MRI is paired with DWI, ADC, T2W images and gland, zone, and lesion masks. A radiologist creates a PI-RADS report, then GPT-4 and a PI-RADS decision tree produce an augmented rationale through in-context learning. Gray labels mark existing data and yellow labels mark created data. The figure labels 1,673 public MRI cases.
A PI-RADS decision tree structures clinical guidance, and a PI-RADS report supplies findings for a lesion. The example compares GPT-4o-extracted rationales without and with decision-tree augmentation. Gray highlights identify report information; green highlights identify information added using the decision tree. This report example is separate from the MRI images in the pipeline above.

Large-scale: 1.6K public MRIs, 500 PI-RADS reports, 180K image-mask-rationale triples

Detailed Rationale: Radiologists’ step-by-step reasoning

Scalable: Automated rationale extraction

Expert evaluation of rationale quality

Two expert radiologists each reviewed the extracted rationales across four quality criteria.

  • Strongly agree
  • Agree
  • Neutral
  • Disagree
  • Strongly disagree

Positive = Strongly agree + Agree. Percentages are approximate.

CriterionRating distributionPositive ratings
CoherenceLogical, smooth flow 68%
ConsistencySelf-consistent reasoning 72%
ComprehensivenessAll key imaging features included 83%
Factual accuracyClinically correct information 75%

ProstateVLM

Building on this dataset, ProstateVLM produces lesion, zone, and gland segmentations while connecting its predictions to clinical concepts and supporting image regions (ICML 2025). Training and evaluation code is available.

Segmentation results

On unseen Prostate158 data, ProstateVLM achieved 42.6% lesion Dice, compared with 38.3% for ITUNet, the strongest reported baseline, without fine-tuning on this dataset. The examples below show its segmentations alongside other models and the reference annotations.

Original segmentation comparison. Left: rationale dataset lesion, zone, and gland examples. Upper right: unseen Prostate158 lesion and zone examples. Lower right: unseen MSD-Prostate zone example. Each panel compares U-Net, MA-SAM, ProstateVLM (Ours), and ground truth, with individual Dice scores. The color legend beneath the left panel identifies the three datasets.
Segmentation examples from the rationale dataset and unseen Prostate158 and MSD-Prostate data. All methods were trained on the rationale dataset, with no fine-tuning on the external datasets. Numbers are Dice scores for the illustrated cases (1 = perfect overlap).

Explanations linked to image evidence

ProstateVLM pairs clinical explanations with supporting image regions. In a comparison on 20 selected MRI scans, it achieved higher accuracy than OpenAI o1 for tumor classification, tumor location, and PI-RADS scoring, while also providing localized visual evidence. The comparison below shows the textual and image-grounded explanations alongside the quantitative results.

OpenAI o1’s textual explanation in the study example. Red highlights mark incorrect statements about lesion location, margin, size, and PI-RADS score; green highlights mark correct statements about lack of invasion. ProstateVLM’s explanation for the same example: transition-zone location, a mass confined to the prostate, moderate hypointensity, and PI-RADS score 5, with supporting MRI heatmaps. Reported accuracy, in the order random guess, OpenAI o1, and ProstateVLM: tumor classification 50%, 45%, and 90%; tumor location 50%, 22%, and 78%; PI-RADS score 25%, 22%, and 89%.
Comparison on 20 selected MRI scans (9 positive and 11 negative). Both models received MRI inputs; ProstateVLM also provided localized visual evidence. Red and green highlights mark incorrect and correct statements. Chart values are accuracy fractions (0.90 = 90%).

A tool for run-time failure detection

To help radiologists assess the reliability of ProstateVLM’s predictions, we developed a complementary run-time failure-detection tool (ECCV 2026). For each new scan, it analyzes the segmentation model’s internal signals to produce a failure score and highlight potentially incorrect regions for review, without requiring a reference mask.

Localizing a potential error

AI segmentation
Prostate MRI with the predicted lesion contour in red and reference annotation in yellow. The prediction extends beyond the reference; its case-level Dice score is 74.1%.
Flagged regionsThe same prostate MRI with regions flagged as false positives by the failure-detection tool shown in red.
PI-CAI example: AI mask (red) and reference contour (yellow) on the left; flagged false positives (red) on the right. The reference and Dice score (DSC, %) are for evaluation only.

Detection on unseen data

Trained on PI-CAI, the detector was evaluated on Prostate158 without fine-tuning.

AUROC measures how well failures are separated from successful predictions. Higher is better; 50% is chance.

Acknowledgments

This research is supported by the National Institutes of Health / National Cancer Institute through R21 CA301093, with collaborators at the University of Virginia and Memorial Sloan Kettering Cancer Center.